MetaNetX SDK Documentation

Parse and process information from MetaNetX for MIRIAM compatibility using the Identifiers.org namespaces.

Install

It’s as simple as:

pip install metanetx-sdk

Usage

The authoritative source on how to use the various commands is always accessible via the commands’ help.

mnx-sdk -h

Normally you would start by loading the files from the MetaNetX FTP server

mnx-sdk pull ./data

and then transforming each data table.

mnx-sdk etl chem-prop ./data/chem_prop.tsv.gz ./data/transformed_chem_prop.tsv.gz

You can also directly use the functions from the metanetx_sdk.api module.

Contents

API Reference

metanetx_sdk

metanetx_sdk package
Subpackages
metanetx_sdk.cli package Submodules metanetx_sdk.cli.cli module metanetx_sdk.cli.etl module Module contents metanetx_sdk.data package Module contents metanetx_sdk.model package Submodules metanetx_sdk.model.ftp_configuration_model module metanetx_sdk.model.path_info_model module metanetx_sdk.model.table_configuration_model module Module contents metanetx_sdk.transform package Submodules metanetx_sdk.transform.chemical module metanetx_sdk.transform.compartment module metanetx_sdk.transform.reaction module Module contents
Submodules
metanetx_sdk.api module
metanetx_sdk.extract module
metanetx_sdk.ftp module
metanetx_sdk.helpers module
Module contents

Indices and Tables